I have an RNA-seq study with 6 runs. The output is 6 Illumina fastq files. I
would like to be able to run FASTQ Groomer and Bowtie on all 6 in parallel,
utilizing a multi-processor box. Is this possible? It appears (to our IT
group) that Galaxy won't be able to utilize multiple processors on an SMP box
for the same user session, and we would need to set up a cluster to do things
like this. Is this so? Is there a work-around?
Yury V. Bukhman, Ph.D.
Associate Scientist, Bioinformatics
Great Lakes Bioenergy Research Center
University of Wisconsin - Madison
445 Henry Mall, Rm. 513
Madison, WI 53706, USA
Phone: 608-890-2680 Fax: 608-890-2427
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