I can not seem to get MACs to call peaks for some very large data sets (30
million aligned reads).  I know that this is a computational issue and not a
matter of there not being peaks.  Do the ChIP and Input files need to be in
BED-3?  If not, what type of file format do they need to be in?  They are in
BED, but do have different numbers of columns.

galaxy-user mailing list

Reply via email to