> > > I have patched galaxy to have cuffdiff handle replicates and to do > normalization, when that gets merged into the main branch your workflow will > be the same except you won't have to merge all of the bam files from each > condition together to use cuffdiff. >
Hi all, I merged Rory's changes into galaxy-central, so Cuffdiff now supports replicates. I'll see what I can do for Cuffcompare; in the near-term, repeated merging using Cuffcompare will produce a GTF file that is both correct and usable with Cuffdiff. Thanks, J.
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