this is an example of my CuffDiff gene fpkm tracking file.

tracking_id     class_code      nearest_ref_id  gene_short_name tss_id  locus   
q1_FPKM q1_conf_lo      q1_conf_hi      q2_FPKM q2_conf_lo      q2_conf_hi
XLOC_000001     -       -       MT-ND5  -       chrM:0-16571    12484.2 12260.8 
12707.7 11447   11233.1 11661
XLOC_000002     -       -       USP14   TSS1,TSS2,TSS3  chr18:148586-236453     
16.7235 9.41244 24.0346 19.437  11.7368 27.1371
XLOC_000003     -       -       SMCHD1  
TSS10,TSS11,TSS12,TSS4,TSS5,TSS6,TSS7,TSS8,TSS9 chr18:2719322-2728540   28.2493 
17.5093 38.9892 27.2263 16.6263 37.8262
XLOC_000004     -       -       EMILIN2 TSS13,TSS14     chr18:2880607-2882469   
3.98118 0       7.99721 4.62875 0.278519        8.97899

I this is normal, how can I find the class code of transcript listed in the 
CuffDiff gene expression file?


thank you in advance

Samuele.

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