On Fri, Feb 18, 2011 at 12:08 PM, Felix Hammer <hamm...@cip.ifi.lmu.de> wrote:
> Hi,
> is there an easy way to use Galaxy to convert SAM to GFF?
> thx,
> Felix

How so?

SAM/BAM shows you where your reads map, GFF is used for
annotation (e.g. where the genes are and what they may do).

Are you talking about using SAM/BAM transcriptome mapping
(RNA-Seq) for gene finding?

Peter
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