On Fri, Feb 18, 2011 at 12:08 PM, Felix Hammer <[email protected]> wrote: > Hi, > is there an easy way to use Galaxy to convert SAM to GFF? > thx, > Felix
How so? SAM/BAM shows you where your reads map, GFF is used for annotation (e.g. where the genes are and what they may do). Are you talking about using SAM/BAM transcriptome mapping (RNA-Seq) for gene finding? Peter _______________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
