I second that, I just ran my first run of Groomer today and I would have 
cancelled the top for taking too long if I didn't know the CPU was busy.


On 2/24/11 11:24 AM, "Johnson, Kory (NIH/NINDS) [C]" <johnso...@ninds.nih.gov> 


Do you have a chart or table that projects time for Groomer to complete vs 
number of reads provided?

Have submitted job totaling 25M Illumina reads in FASTQ v1.3+ format and it is 
taking time on the order of days.

What would be helpful, if not on the development schedule is a progress bar or 
% completed reported as text, anything to give indication that the job 
submitted is processing correctly, not hung, and it can be estimated how long 
it will take.

Thank you,

Kory Johnson


Kory R. Johnson, MS, PhD
Sr. Bioinformatics Scientist



Providing Contract Services For:

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Division of Intramural Research (DIR),
National Institute of Neurological Disorders & Stroke (NINDS),
National Institutes of Health (NIH),
Bethesda, Maryland

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email:      johnso...@ninds.nih.gov

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