On Thu, Feb 24, 2011 at 8:47 PM, Amy Boddy <[email protected]> wrote: > Hello, > I was wondering how Galaxy calculates the quality score for NGS data? > Is there any documentation I could read on how this is calculated? > Thanks! > -Amy Boddy
Which quality score are you talking about? Raw reads? Mappings? If it's FASTQ files you mean, may I suggest: http://dx.doi.org/10.1093/nar/gkp1137 and http://en.wikipedia.org/wiki/FASTQ_format Peter _______________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
