On Thu, Feb 24, 2011 at 8:47 PM, Amy Boddy <abo...@med.wayne.edu> wrote:
> Hello,
> I was wondering how Galaxy calculates the quality score for NGS data?
> Is there any documentation I could read on how this is calculated?
> Thanks!
> -Amy Boddy

Which quality score are you talking about? Raw reads? Mappings?
If it's FASTQ files you mean, may I suggest:

http://dx.doi.org/10.1093/nar/gkp1137

and

http://en.wikipedia.org/wiki/FASTQ_format

Peter
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