On Mon, Feb 28, 2011 at 9:28 PM, Yang Liu <ywl5...@psu.edu> wrote:
> Is there any tool in Galaxy for trimming the Barcode
> in 454 sequencing data? Thanks.


The Roche off instrument applications cover this (working
directly with the SFF files). Try asking Edward Kkirton if he
would update his "Suite of Newbler tools" wrappers in the
Community Tool Shed to handle barcode trimming (and
dividing SFF files by barcode). See http://community.g2.bx.psu.edu/

Alternatively, and maybe not quite what you need, I'm
working on barcode/primer/adapter trimming for FASTA,
FASTQ and SFF files - see this thread earlier this month
on the Galaxy dev mailing list:

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