> I tried replying to the galaxy userlist but it said its for authorized users 
> only, and i asked for permission but no response yet. 

You can manage your subscription to galaxy-user here:

> I just had one quick question,  the output files from of CDS diff, promoters 
> diff and splicing diff from cuffdiff only report have sqrt(JS), teststat, and 
> p value stats?

Correct. You can find full details of Cuffdiff's outputs in the manual:

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