Ah, permissions, that may be the ticket.  I will try again and see.

thanks a lot!

karl


> Hi Karl,
> As a quick check, are the permissions for the S3 file set so anyone can
> read
> the file? That's required before Galaxy's upload tool will be able to
> access
> the file.
> Alternatively, if you don't want to set such loose permissions, you should
> be able to get a a signed URL for the given file using a Firefox extension
> S3Fox.
>
> Enis
>
> On Mon, Mar 14, 2011 at 4:40 PM, <karlerh...@berkeley.edu> wrote:
>
>>
>> Hello,
>>
>> I have been able to get Galaxy to instantiate on our Cloud account, and
>> would like to use the NGS tools to trim and map Illumina libraries.
>>
>> However, when I tried to import .txt files (the data contained in these
>> files are in fastq format) located in an S3 bucket, Galaxy did not
>> recognize them as fastq data.  I tried to import the files via the URL
>> of
>> the S3 bucket, and Galaxy just imported the actual name of the URL
>> rather
>> than the file itself.
>>
>> Do I need to change the extension of these .txt files to .fastq?  Or
>> have
>> I gotten something wrong with respect to the location of the data in the
>> S3 bucket?
>>
>> thanks for any help!
>>
>> karl
>>
>> ___________________________________________________________
>> The Galaxy User list should be used for the discussion of
>> Galaxy analysis and other features on the public server
>> at usegalaxy.org.  Please keep all replies on the list by
>> using "reply all" in your mail client.  For discussion of
>> local Galaxy instances and the Galaxy source code, please
>> use the Galaxy Development list:
>>
>>  http://lists.bx.psu.edu/listinfo/galaxy-dev
>>
>> To manage your subscriptions to this and other Galaxy lists,
>> please use the interface at:
>>
>>  http://lists.bx.psu.edu/
>>
>


___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

Reply via email to