Hi,

I am receiving the following error when I try to run the Indel Analysis tool
on a sam file.  I kept the Frequency threshold at the default 0.015.


Traceback (most recent call last):
  File "/galaxy/home/g2main/galaxy_main/tools/indels/indel_analysis.py",
line 227, in
    if __name__=="__main__": __main__()
  File "/galaxy/home/g2main/galaxy_main/tools/indels/indel_analysis.py",
line 84, in __main__
    add_to_mis_matches( mis_matches[ chrom ], pos, bases )
  File "/galaxy/home/g2main/galaxy_main/tools/indels/indel_analysis.py",
line 34, in add_to_mis_matches
    mis_matches[ pos + j ] = { base: 1 }
MemoryError


Prior to that I tried with Frequency threshold 0.0 and it ran for days on
end without any results. And I've tried Frequency threshold of 0.10 and it
gave and error that said "Killed" with no explaination.

Is there an error with the tool?

Thanks

Evan
-- 
Evan Schwab
Research Associate
Megason Lab
Department of Systems Biology
Harvard Medical School
200 Longwood Ave
Boston, MA 02115
908-938-3779
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

Reply via email to