I convert SOLiD csfasta- and qual-files to fastq-files and map those against
I would like to use the resulting sam-files in the IGV browser (Broad
Therefore, the sam-file need to be sorted an indexed. This could be done
using the igvtools.
However, it would be nicer if this sorting and indexing could be done
automatically using GALAXY.
I guess that it is certainly possible but I do not know how.
Could anybody let me know how it works and what function I have to use,
How can I sort the sam-file the correct way?
Thank you in advance.
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