> Are there any tools like HMMER (2.3.2 or 3.0) available on Galaxy to run a
> HMM on a DNA or protein sequence? I was not able to find any. Thanks
HMMer is not available on our public server, nor is there anything similar.
However, there is a wrapper for hmmscan in the Galaxy Tool Shed:
http://community.g2.bx.psu.edu/ that you can use if download and install on a
local Galaxy instance.
I expect we'll add HMM support in the future, but it's not a priority right now.
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at: