I tried agaian and the same problem. I tuned off the bias correction but 
mantained the GFT file. May be this is the problem? I didnt find your history.

----- Mensaje original ----
De: Jeremy Goecks <jeremy.goe...@emory.edu>
Para: Cristian Rojas <cristianroja...@yahoo.com.ar>
CC: galaxy-user@lists.bx.psu.edu
Enviado: miƩrcoles, 30 de marzo, 2011 16:16:14
Asunto: Re: [galaxy-user] Trouble with RNAseq analysis

On Mar 30, 2011, at 3:01 PM, Cristian Rojas wrote:

> Hi Jeremy, I turned off the bias correction and didnt use the genome option,
> just put the refernde (GTF file), but still the problem.
> Any help?

I was able to run Cufflinks successfully with bias correction turned off; see 
the history that I've shared with you. Please try one more time and, if it 
doesn't work, report it using the bug icon next to the broken dataset.


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