Hello Ela,

To set up your local Galaxy instance to display at UCSC, please follow the instructions on this wiki:


https://bitbucket.org/galaxy/galaxy-central/wiki/ExternalDisplayApplications/Tutorial

If you would like more help, please let us know.

Best,

Jen
Galaxy team

ps: Thanks Hiram for passing this on so we could help Ela!


For next time Ela, a good mailing list to ask technical questions about Galaxy local instances is "galaxy-...@list.bx.psu.edu". The growing development community will often have many helpful suggestions when local installation/cluster/cloud issues pop up.

For scientific data and tool questions in general or those based on a history at Galaxy main, this list "galaxy-user@lists.bx.psu.edu" is the best choice.

On 3/31/11 7:58 AM, Hiram Clawson wrote:
Good Morning Dr. Hunt:

Can you please clarify what upload function from galaxy you are
trying to perform ?  Perhaps the galaxy user help email list
could direct you to advice on this subject ?  (copied on this
email)  The Ensembl genome browser accepts the same types of
upload tracks as does the UCSC genome browser.

--Hiram

----- Original Message -----
From: "Pustulka-Hunt Elzbieta (SystemsX.ch)"<ela.h...@systemsx.ch>
To: gen...@soe.ucsc.edu
Sent: Thursday, March 31, 2011 5:19:55 AM
Subject: [Genome] USCS browser, access from Galaxy

Connection refused
Couldn't connect to 127.0.0.1 8080
Couldn't open 
http://127.0.0.1:8080/root/display_as?id=27&display_app=ucsc&authz_method=display_at

Hi,
I have a local installation of Galaxy. Is it at all possible to upload (easily) 
data from Galaxy to your browser? I have no trouble uploading an extra track to 
Ensembl. Could you support such access?
Regards
Ela

------------------------------------------------------------------------------------------------
Dr Ela Hunt
SyBIT Deputy Project Manager
Clausiusstr. 45, CLP D 2
ETHZ, CH-8092 Zurich
+41 44 632 93 37
https://wiki.systemsx.ch/display/~ela.h...@systemsx.ch/Dr+Ela+Hunt
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
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local Galaxy instances and the Galaxy source code, please
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