I am trying to map metagenomic Illumina reads to the reference
genomes. I used Galaxy LASTZ tool to align Illumina reads to
bacteriophage B3, that genomic sequence I downloaded from NCBI
website. LASTZ produced an output file in SAM format, the file size is
1.8 MB and contain 16,000 lines. Then, I used Galaxy SAM tools to
converted SAM to BAM, and now I am trying to visualize the BAM file in
e.g. BamView or Integrated Genome Browser, but without any success.
Can anybody tell me what I am doing wrong or how to visualize the
alignment, please?

Thank you,

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