I generally take the GTF file to UCSC genome browser. 
If you are visualizing Bam file after alignment. I found IGV convinenet, though 
you may be able to visualize in Galaxy.
 
Vasu

--- On Fri, 5/6/11, puvan...@umn.edu <puvan...@umn.edu> wrote:


From: puvan...@umn.edu <puvan...@umn.edu>
Subject: Re: [galaxy-user] RNA seq analysis
To: "David Matthews" <d.a.matth...@bristol.ac.uk>
Cc: galaxy-user@lists.bx.psu.edu
Date: Friday, May 6, 2011, 7:30 PM


Hello

I was able to run RNA seq data against a custom build genome. How can I 
visualize the results. I tried via trackster and unfortunately I couldn't. Can 
you help me?


Thanks

Sumathy
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