Hi Paul,

I'm happy to hear that so far you are happy with the data.

We used the Illumina TruSeq targeting kit, I made the exome target regions 
available as both a .bed and .gff file on the FTP.

Best regards
Jonas


Fra: galaxy-user-boun...@lists.bx.psu.edu 
[mailto:galaxy-user-boun...@lists.bx.psu.edu] På vegne af Guru Ananda
Sendt: 06 May 2011 16:47
Til: Peter Cock
Cc: galaxy-user@lists.bx.psu.edu
Emne: Re: [galaxy-user] Text Manipulation: Filter out duplicates (uniq) from an 
plain text file ?

Hi Peter and Roman,

The "Count" tool under "Statistics" section provides uniq-like functionality. 
If you run this tool by selecting all columns under "Count occurrences of 
values in column(s)" field, your output will contain one line per record, with 
the 1st column containing the number of occurrences of each record.

Hope this answers your question.
Thanks for using Galaxy,
Guru.


On Fri, May 6, 2011 at 10:22 AM, Peter Cock 
<p.j.a.c...@googlemail.com<mailto:p.j.a.c...@googlemail.com>> wrote:
On Fri, May 6, 2011 at 3:16 PM, Roman Valls 
<brainst...@nopcode.org<mailto:brainst...@nopcode.org>> wrote:
> Well, having similarly basic tools (in Galaxy) that can be performed on
> the commandline, such as "sort" or "cut" I just wondered how come a
> "uniq" is not there on the tool panel in some form/name.
>
> Thanks for the feedback Rory !
That's a timely question - I was also looking for something within Galaxy
to take a text file and remove duplicate lines.

Peter
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org<http://usegalaxy.org>.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

 http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

 http://lists.bx.psu.edu/



--
Graduate student, Bioinformatics and Genomics
Makova lab/Galaxy team
Penn State University
505 Wartik lab
University Park PA 16802
g...@psu.edu<mailto:g...@psu.edu>

___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

Reply via email to