Hi, when I converted the solid output to fastq, the galaxy always complained
the following error. Does anybody know why>>
-------------
An error occurred running this job:Traceback (most recent call last):
File
"/galaxy/home/g2main/galaxy_main/tools/next_gen_conversion/solid2fastq.py",
line 207, in <module>
main()
File
"/galaxy/home/g2main/galaxy_main/tools/next_gen_conversion/solid2fastq.py",
line 188, in main
Traceback (most recent call last):
File
"/galaxy/home/g2main/galaxy_main/tools/next_gen_conversion/solid2fastq.py",
line 207, in
main()
File
"/galaxy/home/g2main/galaxy_main/tools/next_gen_conversion/solid2fastq.py",
line 188, in main
merge_reads_qual( fr, fq, con, trim_name=options.trim_name, out='db',
double_encode=options.de, trim_first_base=options.trim_first_base,
min_qual=options.min_qual, table_name="f3" )
File
"/galaxy/home/g2main/galaxy_main/tools/next_gen_conversion/solid2fastq.py",
line 83, in merge_reads_qual
cursor.execute('insert into %s values("%s","%s","%s")' % (table_name,
defline, lines[0], qual ) )
sqlite3.OperationalError: near "?3": syntax error
-----------
Thanks!
Jia-Xing
--
Jia-Xing Yue
Graduate Student
Ecology & Evolutionary Bio. -MS 170
Rice University
6100 Main Street
Houston TX 77005
Phone: 1-832-360-6228
E-mail: y...@rice.edu
Blog: http://bestrok.blogspot.com/
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