> From: Tilahun Abebe <[email protected]> > > We are trying to load Illumina data to our local Galaxy instance. The > files are between 700 MB and 2.2 GB. Files below 2 GB load in less than > 5 minutes. Files larger than 2 GB don't upload at all. We installed > Galaxy locally because we thought loading files will be faster than the > server version. Any suggestions to solve this problem is highly appreciated.
While (from others experience) Galaxy _should_ be able to upload files that large, we've had some problems with our local installation too. Investigation didn't reveal any cause, so we put it down to the quality of our network. You might what to look at the webserver or proxy that you have in front of Galaxy - from memory, both Apache and nginx can be configured to impose file size limits, so that _may_ be the problem. In any event, you might want to configure your server to handle uploads and downloads directly as per <https://bitbucket.org/galaxy/galaxy-central/wiki/Config/ProductionServe r>. Finally you can pass an url to the upload dialog to get Galaxy to pull the file from an ftp server - for example - and that may prove more robust. ---- Paul Agapow ([email protected]) Bioinformatics, Centre for Infections, Health Protection Agency ----------------------------------------- ************************************************************************** The information contained in the EMail and any attachments is confidential and intended solely and for the attention and use of the named addressee(s). It may not be disclosed to any other person without the express authority of the HPA, or the intended recipient, or both. If you are not the intended recipient, you must not disclose, copy, distribute or retain this message or any part of it. This footnote also confirms that this EMail has been swept for computer viruses, but please re-sweep any attachments before opening or saving. HTTP://www.HPA.org.uk ************************************************************************** ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
