Does anyone know if there is a way to get the deleted base information that
corresponds to the "Extract indels from SAM" output?
The output from this tool includes the bases for insertions or "-" for
deletions. I want to get the actual bases instead of the "-".
I assume there is a way to use the SAM file to extract the information, but if
someone already has a nifty way to do it, that would be great.
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