GALAXY TOOL ERROR REPORT
------------------------

This error report was sent from the Galaxy instance hosted on the server
"192.168.0.36:8080"
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This is in reference to dataset id 377 from history id 2
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You should be able to view the history containing the related history item

176: Cuffcompare on data 175: transcript accuracy 

by logging in as a Galaxy admin user to the Galaxy instance referenced above
and pointing your browser to the following link.

192.168.0.36:8080/history/view?id=f597429621d6eb2b
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The user 'joh...@ibms.sinica.edu.tw' provided the following information:

While executing cuffcompare, I encountered this error message:

Error running cuffcompare. [Errno 2] No such file or directory: 'cc_output'

I was practicing RNA-seq analysis steps on newly installed galaxy to test if i 
could easily analyze my data.

I could run cufflinks and cuffdiff through galaxy, but i'm unable to run 
cuffcompare.

how should i solve this problem?

thanks a lot!
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job id: 126
tool id: cuffcompare
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job command line:
python /home/galaxy/software/galaxy_dist/tools/ngs_rna/cuffcompare_wrapper.py   
                                        -s                     
--ref_file="None"                 --dbkey=hg19                  
--index_dir=/home/galaxy/software/galaxy_dist/tool-data                         
 /home/galaxy/software/galaxy_dist/database/files/000/dataset_376.dat     
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job stderr:
Error running cuffcompare. [Errno 2] No such file or directory: 'cc_output'

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job stdout:
cuffcompare v1.0.3 (2403)
cuffcompare -o cc_output  -s /home/galaxy/data/galaxy_data/sam_index/hg19.fa 
./input1 

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job info:
None
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job traceback:
None
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(This is an automated message).
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