Hi there,

I noticed on Seqanswers there was a post inquiring about the potential addition of DE-Seq (Anders & Huber) to the growing stack of tools available in galaxy.

I for one would love to see this integrated.
I typically use it in combination with HT-Seq, a set of python scripts also from Simon Anders. This simply has the functionality of converting a SAM alignment to simple counts of reads per transcript across the genome. Probably there are tools is Galaxy that do a similar thing. In any case I think many people are using TopHat -> HT- Seq -> DE-Seq for analysis of RNAseq data so it would be great if DE- Seq were supported in Galaxy

My two cents..

Thanks for all your great work!

Christopher Balakrishnan
Institute for Genomic Biology
University of Illinois
1206 W. Gregory Drive MC-195
Urbana, IL 61801
phone: 617-905-2910

The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:


To manage your subscriptions to this and other Galaxy lists,
please use the interface at:


Reply via email to