I was wondering how to get a hold of the axt and/or nib files required by 
alignseq.loc. It's not mentioned on the local NGA Galaxy setup page. I was 
surprised to learn that:   "Fetch Sequences -> Extract Genomic DNA" requires 
AXT or NIB alignment files in order to extract mouse genomic DNA from BED file 
co-ordinates?!

I see some AXT files at UCSC (a lot for human) but the alignment file I am 
guessing I needed (for this mm9 genome extraction) is mouse self? I'm hoping I 
don't have to generate them all myself, but if I do, I would love to know how 
to do it (parameters, etc...).

Any info appreciated,

 -John

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