Of course - Doh! Many thanks!!

On 4 Jul 2011, at 18:47, Oliver, Gavin wrote:

> "u" represents unknown intergenic transcripts.
> 
> 
> -----Original Message-----
> From: galaxy-user-boun...@lists.bx.psu.edu on behalf of David Matthews
> Sent: Mon 04/07/2011 17:48
> To: galaxy-user@lists.bx.psu.edu
> Subject: [galaxy-user] Looking for new transcripts with cufflinks
> 
> Hi,
> 
> I am working with HeLa cells and want to know how to get cufflinks etc. to 
> highlight if a region of the genome is being transcribed that is not in the 
> ensembl gtf. I know that cufflinks highlights with class code "j" regions 
> that do not match a known gene and therefore may be novel but most of these 
> arise from transcription on or near known genes. Does anyone know how to look 
> for transcription that is clearly distinct from known genes? This is a wild 
> goose chase but worth a peek just in case...
> 
> 
> Best Wishes,
> David.
> 
> __________________________________
> Dr David A. Matthews
> 
> Senior Lecturer in Virology
> Room E49
> Department of Cellular and Molecular Medicine,
> School of Medical Sciences
> University Walk,
> University of Bristol
> Bristol.
> BS8 1TD
> U.K.
> 
> Tel. +44 117 3312058
> Fax. +44 117 3312091
> 
> d.a.matth...@bristol.ac.uk
> 
> 
> 
> 
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