Thanks for reporting this. We might need some more information to sort this out.
Is this error seen on Galaxy main or test? If so please share the
history with me so I can see the input and reproduce what sounds like
a wrapper error?
Otherwise, if this is on a private instance, and if the tool has never
produced output successfully, then this may be a dependency
installation problem - eg you may need to ensure that the weblogo3
executable is available and working correctly on the path used by your
execution nodes. To assure yourself that your data works with the
tool, please try running it on main using the same data, and let me
know what you see?
On Tue, Jul 5, 2011 at 12:34 AM, Holger Klein <h.kl...@imb-mainz.de> wrote:
> Dear all,
> I have a problem with the weblogo tool.
> I have a clustalw alignment in fasta format that I'd like to visualize
> as a logo. The sequence logo module ends with a success (green box), the
> info tells me the amount and length of the input data. But the output is
> empty, there are no plots (no matter if I select jpg, png, pdf or text).
> The respective image can't be displayed "because it contains errors" or
> is empty in case of text.
> I suspect that the actual call of the weblogo tool doesn't succeed, but
> I didn't figure out yet on how to check this. Does anybody have hints on
> where to look?
> Dr. Holger Klein
> Core Facility Bioinformatics
> Institute of Molecular Biology gGmbH (IMB)
> Tel: +49(6131) 39 21511
> The Galaxy User list should be used for the discussion of
> Galaxy analysis and other features on the public server
> at usegalaxy.org. Please keep all replies on the list by
> using "reply all" in your mail client. For discussion of
> local Galaxy instances and the Galaxy source code, please
> use the Galaxy Development list:
> To manage your subscriptions to this and other Galaxy lists,
> please use the interface at:
Ross Lazarus MBBS MPH;
Associate Professor, Harvard Medical School;
Director of Bioinformatics, Channing Lab; Tel: +1 617 505 4850;
Head, Medical Bioinformatics, BakerIDI; Tel: +61 385321444;
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at: