Hello everyone,

I was trying to run tophat in a local version of galaxy, but I got the
following error:

gzip: stdout: Broken pipe
[Tue Jul 19 14:10:36 2011] Processing bowtie hits
Error: could not open pipe gzip -cd <

It seems that when tophat is calling gzip, the pipe can not be open.

Can anyone suggest a fix to this problem?

Song Li
Postdoctoral Associate
Uwe Ohler Laboratory
Institute for Genome Sciences and Policy
101 Science Drive
Phone: 919-68-2124
Duke University
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