I am trying to run Cufflinks installation in Galaxy on Solexa RNAseq samples
from HeLa cells.
Running Cuffcompare, according to the manual, should produce a tmap file,
listing FMI values for detected isoforms. However, my files only have either
"100" or "0" in FMI field. And FPKM column contains only zeros.
Is there something wrong with my input files, or parameter settings? Or is it
rather a specific issue with Galaxy Cufflink's installation?
The data in question is available here:
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at: