Hello Jennifer,
Aaaah so the grooming means creating the .bai file? Ok, I didn't know,
thanks for the information. But that leaves me wondering why it is
necessary to copy the data (unless the alignments are not sorted yet,
which is possible knowing where the data comes from). I won't have much
time left to look into it but if I can I'll let you know.
Thanks,
L-A
Le 26/07/2011 19:50, Jennifer Jackson a écrit :
Hello L-A,
The load is necessary to create/link the index .bam index. No
work-around is available, however if you develop one, we would be glad
to consider it as an addition.
If there are any updates on our side, we will send more information.
Thanks!
Jen
Galaxy team
On 7/18/11 2:05 AM, Louise-Amélie Schmitt wrote:
Hello everyone
Whenever we try to load BAM files without copying them, we get an error
stating the files need grooming, and can't use them at all.
Is it this serious? Would there be a way to bypass that?
Thanks!
L-A
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
