I am running Galaxy locally (Ubuntu 11.04) and I am getting this error
message when I try to use mapping with bowtie:

Error indexing reference sequence
/bin/sh: bowtie-build: not found

   Then I downloaded bowtie and tried to create a symbolic link using at
ln -s /home/koala2/bowtie bowtie

   Then I get this error message:
ln: creating symbolic link `bowtie': Permission denied

   I know that is more a linux issue than Galaxy, but does anyone have any
suggestion? I changed the permission of bowtie folder and file but keep
getting same error. I am logged as administrator too.

Thank you.

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