IGV should allow you to do this  but not sure about trackbrowser in Galaxy.
Vasu

--- On Wed, 8/3/11, Jiannong Xu <j...@nmsu.edu> wrote:


From: Jiannong Xu <j...@nmsu.edu>
Subject: [galaxy-user] visualization
To: "galaxy-user@lists.bx.psu.edu" <galaxy-user@lists.bx.psu.edu>
Date: Wednesday, August 3, 2011, 6:03 PM


Hi Jen,

I mapped illumine reads to draft genomic contigs, and try to visualize the 
mapping. Is there any way I can use my own reference contigs for visualization? 

Thanks

John Xu
NMSU


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The Galaxy User list should be used for the discussion of
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