This must seem like a newbie question but I cant get a clear answer. My
understanding from the galaxy wiki
is that all intervals in galaxy are 0 based, start inclusive end exclusive.
but when i use generate pileup/filter pileup and convert to intervals, i get
something like this:
chr10 1056309 1056310 G C +
When i look up the SNP (G-->C) it is pretty clearly 1056310. Which would make
the "interval" end inclusive. this is key because when i annotate snp's
against dbSNP, i need to have the right cooridnates.
Can anyone provide some guidance? Thanks!
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