Hi David,
Trinity is still under development and really shouldn't be on the Test
instance yet (in fact, we are removing it). Very sorry about any
confusion. It is a known that assembly tools would be very useful for
many of our users (starting from a few sources: SAMTools Pileup, de novo
RNA-seq) and are working towards tools/solutions in the near term.
To be alerted when new tools are available, you can follow our News RSS
feed http://galaxyproject.org/wiki/News. New tools are always announced
in the News Brief, in an email to mailing list subscribers, and
sometimes Tweeted.
Thanks for using Galaxy!
Best,
Jen
Galaxy team
On 9/13/11 2:03 PM, David Joly wrote:
I want to run Trinity on the "test" instance of Galaxy, but there seems
to be a problem. The analysis complete very quickly and I've got no
assembled transcripts. In the log file created by Trinity, there is one
line:
/var/spool/torque/mom_priv/jobs/1204985.thumper.g2.bx.psu.edu.SC
<http://1204985.thumper.g2.bx.psu.edu.SC>: 11: Trinity.pl: not found
Any idea?
David
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Jennifer Jackson
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
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