On Thu, Sep 29, 2011 at 7:49 PM, Cecilia Tamborindeguy <[email protected]> wrote: > Hello, > > I would like to know if Galaxy can do de novo assembly without a reference > genome. > > Thanks. > > Cecilia
Are you trying to use the Public Galaxy or a local install? There are several assemblers with Galaxy Wrappers on the Galaxy ToolShed (e.g. Roche "Newbler", and MIRA 3) which you could add to your own local Galaxy if you have one. However, do novo genome assembly can be very computationally demanding, so not many Galaxy Instances will want to offer it. Peter ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
