On Thu, Sep 29, 2011 at 7:49 PM, Cecilia Tamborindeguy
<ctamborinde...@ag.tamu.edu> wrote:
> Hello,
>
> I would like to know if Galaxy can do de novo assembly without a reference
> genome.
>
> Thanks.
>
> Cecilia

Are you trying to use the Public Galaxy or a local install? There
are several assemblers with Galaxy Wrappers on the Galaxy
ToolShed (e.g. Roche "Newbler", and MIRA 3) which you could
add to your own local Galaxy if you have one.

However, do novo genome assembly can be very computationally
demanding, so not many Galaxy Instances will want to offer it.

Peter
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

Reply via email to