It's the first time for me to use cufflinks in galaxy, two choices confused me 
as follows:
Perform Bias Correction: 
 No Yes
Bias detection and correction can significantly improve accuracy of transcript 
abundance estimates. 

Set Parameters for Paired-end Reads? (not recommended): 
 No Yes
what is the Bias correction and how does it work? And for "set parameters for 
paired-end reads? (not recommended)" ,what would be important difference 
between recommended and not recommended? 
Thanks a lot!
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:


To manage your subscriptions to this and other Galaxy lists,
please use the interface at:


Reply via email to