On Tue, Oct 18, 2011 at 9:21 AM, arabidopsis <svine...@gmail.com> wrote: > If Illumina 1.8+ is already using the Sanger FASTQ encoding, the file should > be recognized by downstream applications, like Quality statistics computer, > quality filter etc. However, my file is not visible by those programs and > when I click on it, only "uploaded fastq file" is displayed, without > encoding details. > > S.
Have you told Galaxy it is fastqsanger? My guess is the upload tool has defaulted to the generic fastq. Look with the "pencil" icon to edit the attributes of the uploaded FASTQ file in your Galaxy history. Peter ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/