On Tue, Oct 18, 2011 at 9:21 AM, arabidopsis <svine...@gmail.com> wrote:
> If Illumina 1.8+ is already using the Sanger FASTQ encoding, the file should
> be recognized by downstream applications, like Quality statistics computer,
> quality filter etc. However, my file is not visible by those programs and
> when I click on it, only "uploaded fastq file" is displayed, without
> encoding details.
>
> S.

Have you told Galaxy it is fastqsanger? My guess is the upload tool
has defaulted to the generic fastq. Look with the "pencil" icon to
edit the attributes of the uploaded FASTQ file in your Galaxy history.

Peter
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