Hi Marc, Yes, if you change "Bowtie settings to use" from common to full, you'll see the entire parameter list, including "Number of mismatches for SOAP-like alignment policy (-v):"
-Dannon On Oct 27, 2011, at 8:40 AM, KNIGHT M.R. wrote: > Hi, is it possible to run Map with Bowtie for Illumina (version 1.1.2) in –v > alignment mode/ If so, what settings do I need to enter? Many thanks, Marc. > > > *** > Professor Marc R. Knight, > Director, > Durham Centre for Crop Improvement Technology, > School of Biological and Biomedical Sciences, > Durham University, > South Road, > Durham DH1 3LE. > Tel: +44 191 33 41224 > Fax: +44 191 33 41201 > Website: http://www.dur.ac.uk/dccit/ > *** > > > > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
