I've started an alignment using the command line (Tophat v1.3.3). I've uploaded 
the files (accepted.bam) onto Galaxy and upon doing the Cufflinks analysis on 
the Galaxy interface, it shows an error. I had to look at the options. I've 
change the options to default and run it again but still the same error. Is the 
accepted.bam file not compatible with the Galaxy Cufflinks? Is there something 
I not doing? 

Kind regards 


This message is confidential and may be covered by legal professional 
privilege. It must not be read, copied, disclosed or used in any other manner 
by any person other than the addressee(s). Unauthorised use, disclosure or 
copying is strictly prohibited and may be unlawful. The views expressed in this 
email are those of the sender, unless otherwise stated. If you have received 
this email in error, please contact ARC Service Desk immediately. 

To report incidents of fraud and / or corruption in the ARC use our Ethics 
Hotline by:

Phone number  : 0800 21 20 56
Fax number      : 0800 200 796
Email address   : fr...@kpmg.co.za 

For more information on the ARC Ethics Hotline, please visit our website at 
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:


To manage your subscriptions to this and other Galaxy lists,
please use the interface at:


Reply via email to