GeneTrack should be working again on the Main server, thanks for reporting the
For information on the inner workings of GeneTrack, you should consult the
paper that you mentioned, along with http://genetrack.bx.psu.edu/ and you can
additionally contact the GeneTrack author, who I've CC'd here.
Thanks for using Galaxy,
On Nov 10, 2011, at 11:32 AM, Stefanie Ververs wrote:
> Hi everybody,
> I'm using the Genetrack-Peak-Predictor to predict nucleosome positions.
> I still have some questions:
> 1) Am I correct that the genetrack indexer seems to be down on the Public
> Galaxy Server? I get a server error, when I start it.
> (The Genetrack Browser doesn't work either; although I'm still not quite sure
> whether there are dependencies.)
> 2) By now, I know one paper on Genetrack -
> http://bioinformatics.oxfordjournals.org/content/24/10/1305.short and I found
> the following presentation slides:
> http://ged.msu.edu/angus/tutorials-2011/files/lecture-chipseq.pdf. Galaxy
> tells me to "cite Blankenberg D, et al. In preparation."
> Is there additional information? It would be great to know how exactly the
> peak predictor works, but the slides give only a kind of overview, but of
> course no explaining and no details and the paper isn't that clear.
> The Galaxy User list should be used for the discussion of
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The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at: