On Nov 12, 2011, at 6:30 AM, Andrew South wrote:

> Dear Nate -
>  
>  It seems I may have upset the cluster again: I have 3 Lastz jobs running and 
> cannot upload any more data. I had been uploading fine; started 3 lastz 
> mapping jobs (Fasta (1 sequence) vs Fasta (~3000 sequences) output as SNP, 
> when I realised I made a mistake, cancelled these jobs, uploaded the correct 
> files and then ran the 3 comparisons (similar files) again and now these jobs 
> have been running >1hr and I cannot upload any more data.

Hi Andy,

What are the details related to being unable to upload?  Are the datasets 
sitting in a certain state (uploading, queued, etc.)?  Did you have any other 
jobs running at the time?  There are some concurrent job limits that could have 
been responsible.

--nate

>  
> Thanks in advance,
> 
> Andy
>  
> ************************************************************
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> 
> 
> >>> Nate Coraor <n...@bx.psu.edu> 11/11/2011 17:16 >>>
> On Nov 11, 2011, at 10:01 AM, Andrew South wrote:
> 
> > Thanks Nate, hope it's a quick fix. Best wishes, Andy
> 
> Hi Andy,
> 
> All backlogged NGS jobs should now be running, new ones will likely queue 
> until free slots are available.  Please let us know if there's further 
> trouble, and thanks for using Galaxy,
> 
> --nate
> 
> >  
> > ************************************************************
> > Please consider the environment. Do you really need to print this email?
> > 
> > 
> > >>> Nate Coraor <n...@bx.psu.edu> 11/11/2011 14:55 >>>
> > On Nov 11, 2011, at 9:21 AM, Andrew South wrote:
> > 
> > > Hello folks
> > >  
> > >  Anyone else having trouble with running Lastz to map?
> > >  
> > >  Jobs are being sent but not running.
> > >  
> > >  It stopped working for me two days ago after working perfectly, I've 
> > > tried fiddling with the formats but no joy.
> > 
> > Hi Andy,
> > 
> > It looks like there's a problem with the cluster that runs our NGS jobs.  
> > I'm currently looking into it.  Sorry for the inconvenience.
> > 
> > --nate
> > 
> > >  
> > > Thanks,
> > > 
> > > Andy
> > >  
> > >  
> > > Dr A P South 
> > > Centre for Oncology and Molecular Medicine
> > > University of Dundee
> > > Ninewells Hospital & Medical School
> > > Dundee
> > > DD1 9SY
> > > Tel 01382 496432
> > > Fax 01382 633952
> > >  
> > > a.p.so...@dundee.ac.uk
> > >  
> > >  
> > > ************************************************************
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> > > 
> > > The University of Dundee is a registered Scottish charity, No: SC015096
> > > 
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> 
> 
> The University of Dundee is a registered Scottish charity, No: SC015096
> 


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