On Mon, Nov 14, 2011 at 10:08 PM, Chauhan, Archana <achau...@utk.edu> wrote: > Dear Sir/Madam, > > I am registered with galaxy > http://main.g2.bx.psu.edu/. But I recently came across another link as > https://galaxy.jgi-psf.org/ . This has some very good applications > especially w.r.t to the genome assembly (MIRA, velvet), microbial ecology > (Mothur etc) and Stats/Graphing Tools. Overall this links seems much better > than the Main galaxy and fulfils the general aspirations of a user. Is this > link subscribed JGI and its collaborators OR any one can be a part of it. Is > there any version of galaxy server wherein we can have these applications > available for public use. Thank you. >
Tools like MIRA and Velvet can be extremely demanding to run, so are "dangerous"/expensive to offer on a public Galaxy. I don't know who exactly runs https://galaxy.jgi-psf.org/ and if they intend it to be available for external usage. I wrote the MIRA wrapper for our in house use with viral genomes (small enough not to be a big computational load) and published it on the Galaxy toolshed for others to use too in their own Galaxy servers. It is nice to see it being used on https://galaxy.jgi-psf.org/ and it looks like they have a pretty powerful cluster with big memory machines with 500GB of RAM, which should cope with many MIRA work loads. If you have a local Galaxy at your department/institute then try asking them if they can install this and other tools of interest for you. Regards, Peter ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
