Hello Di,

The tool "Filter and Sort -> Select" can be used to select lines from a .bed file for chr1 only. On the tool form, in text box labeled "the pattern:", enter this term:


^chr1\s

Then sort with the tool "Sort" from the same tool group.

Hopefully this helps,

Best,

Jen
Galaxy team

On 12/5/11 3:23 PM, Di Nguyen wrote:
Hi all,

I have a a bed file that I would like sort for chromosome 1 ONLY? Would
you tell me the syntax to "select" lines that are chromosome 1 only
instead of 1 or 10,11-19?

Thank you very much,

Di Nguyen
U of Washington
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