Howdy, Andrew,
One possibility is that there are more jobs on the cluster. I'm not
familiar enough with the galaxy interface to know if there's an easy
way to tell how much time the job sits on the cluster's queue waiting
and how much time the job is actually running.
Assuming there's no cluster difference, are the data conditions
similar between what you are mapping now vs two weeks ago? I.e.
number and length of reads, size of reference sequence, divergence,
repeat content?
Bob H
On Dec 14, 2011, at 10:10 AM, Andrew South wrote:
Hi - is there a reason Lastz is very slow right now? I am mapping
2-3,000, reads against a single, 11Kb, sequence and find that jobs
are either returning an error or taking 16-24hrs to get done. This
time frame was more like 30 minutes two weeks ago. Is there a way to
speed this up? Thanks in advance for any help. Andy
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