Hello Efthymios,

In case no one on this list answers, you may be able to get an answer to your question by contacting the owner of the velvetoptimiser repository.  You can do this by selecting the "Contact repository owner" menu item on the View repository page.



On Dec 20, 2011, at 4:02 AM, Makis Ladoukakis wrote:

Dear Galaxy users,

Has anyone worked with velvetoptimiser tool from the Tool shed?
I have been trying both the stable and the test version of the velvetoptimiser tool and i keep getting the same error:

Traceback (most recent call last):
  File "/home/ladoukef/galaxy_dist/tools/myTools/velvetoptimiser/velvet_optimiser.py", line 102, in 
    if __name__ == "__main__": __main__()
  File "/home/ladoukef/galaxy_dist/tools/myTools/velvetoptimiser/velvet_optimiser.py", line 67, in __main__
    for line in open(contigs_path ):
IOError: [Errno 2] No such file or directory: 'contigs.fa'

Can someone identify where the error is? The file missing (contigs.fa) is supposed to be built by the tool itself.


Thank you,
Efthymios Ladoukakis
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

 http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

 http://lists.bx.psu.edu/

Greg Von Kuster
Galaxy Development Team



___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

Reply via email to