I could use some help on adding a tool to the cloud version of Galaxy. The
Cloud startup process creates, among other things,
/mnt/galaxyTools/galaxy-central which has tools_conf.xml, and subdir tools
etc. This seems not accessible before starting the cloud. I assume I need
to add my tool into the structure as per a local Galaxy instance, and then
get Galaxy to restart, or re-read it's config ? Would appreciate some
Just as background .. I have got a custom proteomics Perl script running ok
under a local version of Galaxy on Mac. Added in to tools_conf.xml, tools
etc. Made several mods to the Perl to stop any writing to stderr except for
fatal show-stopper errors, everyone seems to hit that one, and other small
things to make it play better with Galaxy. Also quite familiar with AWS
EC2, have been using that for a while.
I have Galaxy Cloudman running well, start/stop extra servers etc. Using
the free t1.micro AMI for now, slowish but ok for testing. Or a Spot
Instance of m1.large when I'm impatient.
I couldn't find the answer in a search of Galaxy archives, apologies if
it's there, or obvious in some other way.
Port Jackson Bioinformatics Consulting.
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at: