Dear galaxy Users

I am very very new to galaxy, will be highly obliged if some one could help me to find the way to analyse bacterial tramnscriptome. in the first step itself , i am having trouble to upload files...

Does any one knows how to generate URL to upload data, my fastq files are about 3 gb each,

Is there any specific pipeline to analyse bacterial transcriptome

Thanking all of you

Ateeq
 
Ateequr Rehman
House No. 2 ground floor
Blauenstr. 10
79115 Freiburg im Breisgau


From: Dannon Baker <dannonba...@me.com>
To: mailing list <margeem...@gmail.com>
Cc: galaxy-user@lists.bx.psu.edu
Sent: Wednesday, January 11, 2012 2:11 PM
Subject: Re: [galaxy-user] CloudMan - Persist changes to file system is not a hyperlink / clickable

For sharing a cluster (of any kind) just click the sharing icon () next to the cluster name and the dialog that pops up will walk you through the next steps.

-Dannon


On Jan 11, 2012, at 7:27 AM, mailing list wrote:

So how do I get a share string for /mnt/galaxyData?

Thanks again,

Greg

On Tue, Jan 10, 2012 at 4:16 PM, Dannon Baker <dannonba...@me.com> wrote:
Sorry, I should have specified before -- /mnt/galaxyData is automatically persisted, as it is assumed (and used behind the scenes in the case of a Galaxy Cluster) that this is where data will be kept.  It's only /mnt/galaxyTools or /mnt/galaxyIndices that need individual flagging for persistence.

So, /mnt/galaxyData *is* safe to use for your own customizations and will be persisted automatically with no additional steps required on your part.

-Dannon

On Jan 10, 2012, at 4:02 PM, mailing list wrote:

I'm following the instructions here:
http://wiki.g2.bx.psu.edu/Admin/Cloud/Customize%20Galaxy%20Cloud

I ssh'd in and just made this change:

cd /mnt/galaxyData
sudo git clone git://github.com/JaneliaSciComp/msg.git

Now I want to persist it, but as my subject line says, I don't seem to
have the option in the admin.

Thanks,

Greg
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

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