Hello Steve,

Yes, this is true, many of the Interval Operations tools do not interpret strand. Meaning that you would need to first filter the data by strand, then perform the operation per strand to obtain an inner join result.


Help, including links to screencasts:
http://wiki.g2.bx.psu.edu/Learn/Interval%20Operations

Best,

Jen
Galaxy team

On 11/3/11 1:13 PM, Stephen Eacker wrote:
Hello,
        I using operate on genomic intervals on some data and it always seems to ignore 
the strand information.  Am I missing something or does "operate of genomic 
intervals" disregard strand information?  Is there a tool that does the inner join 
function and  takes into account strand information?

thanks,

Steve

Stephen Eacker, Ph.D.
Postdoctoral Fellow
Dawson Lab
Institute for Cell Engineering
Johns Hopkins Medical Institute
(443) 287-5605
seack...@jhmi.edu




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