Hello William,

To use a custom reference genome, all you need to upload is the single fasta file for the genome. Galaxy will do the rest and create indexes as appropriate.


Hopefully this helps!

Thanks,
Jen
Galaxy team

On 2/6/12 11:51 AM, William Light wrote:
I recently tried to upload a custom made index for bowtie using
Filezilla as my FTP source, but I got an error message, I think due to
the autodetect for file type not recognizing this file type.  Is there
something special that I should do to upload my six .ebwt files for my
reference?



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