Hi all -- I'd like to know what programs are used when I run a tool on my data. Ideally I'd also like to know what parameters are passed to command line tools.
For example, I uploaded a sam file to the main galaxy server at PSU. I ran Filter Indels. I got output. What programs were used in this manipulation? samtools mpileup? GATK? FASTX toolkit? I hope I'm missing something extremely obvious. Thanks for your help. Holly ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/