Hi David,
It sounds like you are using the public Galaxy server at
http://usegalaxy.org (http://main.g2.bx.psu.edu)? A BLAST service is not
available on the public instance. (Megablast is available, but for NGS
query data versus a specific set of target native genomes).
Bjoern is correct that you will need to obtain a Galaxy BLAST wrapper
from the Tool Shed.
http://wiki.g2.bx.psu.edu/Tool%20Shed
Tools Shed entries can be searched for with:
http://galaxy.psu.edu/search/getgalaxy
These would be installed into a local or cloud version of Galaxy and set
up using the following instructions:
http://getgalaxy.org
The galaxy-...@bx.psu.edu mailing list is a good choice if you need
help/advice with set up:
http://wiki.g2.bx.psu.edu/Support#Mailing_Lists
Prior Q/A can also be searched with:
http://galaxy.psu.edu/search/mailinglists
Best wishes for your project,
Jen
Galaxy team
On 2/9/12 9:47 AM, David PANG wrote:
Hi, Everybody,
I uploaded two complete genome sequences and hope to BLAST homologs from
both genome.
Does anybody know how to do BLAST search on galaxy?
Thanks
David
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/wiki/Support
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
